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import json
from traits.api import HasStrictTraits, Instance
from force_bdss.core.execution_layer import ExecutionLayer
from force_bdss.core.input_slot_info import InputSlotInfo
from force_bdss.core.output_slot_info import OutputSlotInfo
from ..factory_registry_plugin import IFactoryRegistryPlugin
class BaseWorkflowReaderException(Exception):
"""Base exception for the reader errors."""
class InvalidFileException(BaseWorkflowReaderException):
"""Raised for a generic file being invalid for some
reason, e.g. incorrect format or missing keys.
"""
class InvalidVersionException(BaseWorkflowReaderException):
"""Raised if the version tag does not satisfy the currently
supported list."""
class MissingPluginException(BaseWorkflowReaderException):
"""Raised if the file requires a plugin we cannot find."""
class ModelInstantiationFailedException(BaseWorkflowReaderException):
"""Raised if we can't instantiate the model from a plugin"""
class WorkflowReader(HasStrictTraits):
"""
Reads the workflow from a file.
"""
#: The Factory registry. The reader needs it to create the
#: specific model objects.
factory_registry = Instance(IFactoryRegistryPlugin)
"""Initializes the reader.
Parameters
----------
factory_registry: FactoryRegistryPlugin
The factory registry that provides lookup services
for a factory identified by a given id.
self.factory_registry = factory_registry
super(WorkflowReader, self).__init__(*args, **kwargs)
def read(self, file):
"""Reads the file and returns a Workflow object.
If any problem is found, raises an InvalidFileException or a
derived, more specialized exception.
Parameters
----------
file: File
A file object containing the data of the workflow in the
appropriate json format.
Returns
-------
Workflow
An instance of the model tree, rooted at Workflow.
Raises
------
InvalidFileException
Raised if the file is corrupted or cannot be read by this reader.
InvalidVersionException
Raised if the version is not supported.
MissingPluginException
The file cannot be opened because it needs a plugin that is not
available.
ModelInstantiationFailedException
When instantiating the model for a given plugin, an exception
occurred. This is likely due to a coding error in the plugin.
json_data = json.load(file)
try:
version = json_data["version"]
except KeyError:
logger.error("File missing version information")
raise InvalidFileException("Corrupted input file, no version"
" specified")
if version not in SUPPORTED_FILE_VERSIONS:
"File contains version {} that is not in the "
"list of supported versions {}".format(
raise InvalidVersionException(
"File version {} not supported".format(json_data["version"]))
wf = Workflow()
wf.execution_layers[:] = self._extract_execution_layers(wf_data)
wf.notification_listeners[:] = \
self._extract_notification_listeners(wf_data)
except KeyError as e:
msg = (
"Could not read file {}. "
"Unable to find key {}. "
"The file might be corrupted or unsupported.".format(file, e))
logger.exception(msg)
raise InvalidFileException(msg)
def _extract_mco(self, wf_data):
"""Extracts the MCO from the workflow dictionary data.
Parameters
----------
wf_data: dict
the content of the workflow key in the top level dictionary data.
Returns
-------
a BaseMCOModel instance of the specific MCO driver, or None
if no MCO is specified in the file (as in the case of premature
saving).
"""
registry = self.factory_registry
if mco_data is None:
# The file was saved without setting an MCO.
# The file is valid, we simply can't run any optimization yet.
return None
mco_id = mco_data["id"]
try:
mco_factory = registry.mco_factory_by_id(mco_id)
except KeyError:
raise MissingPluginException(
"Could not read file. "
"The plugin responsible for the missing "
"key '{}' may be missing or broken.".format(mco_id)
)
model_data = wf_data["mco"]["model_data"]
model_data["parameters"] = self._extract_mco_parameters(
try:
model = mco_factory.create_model(model_data)
except Exception as e:
msg = (
"Unable to create model for MCO {}: {}. "
"This is likely due to a coding error in the plugin. "
"Check the logs for more information.".format(
mco_id, e))
logger.exception(msg)
raise ModelInstantiationFailedException(msg)
def _extract_execution_layers(self, wf_data):
"""Extracts the data sources from the workflow dictionary data.
Parameters
----------
wf_data: dict
the content of the workflow key in the top level dictionary data.
Returns
-------
list of BaseDataSourceModel instances. Each BaseDataSourceModel is an
instance of the specific model class. The list can be empty.
registry = self.factory_registry
layers = []
for el_entry in wf_data["execution_layers"]:
layer = ExecutionLayer()
for ds_entry in el_entry:
ds_id = ds_entry["id"]
try:
ds_factory = registry.data_source_factory_by_id(ds_id)
except KeyError:
raise MissingPluginException(
"Could not read file. "
"The plugin responsible for the missing data source "
"key '{}' may be missing or broken.".format(ds_id)
)
model_data["input_slot_info"] = self._extract_input_slot_info(
model_data["input_slot_info"]
model_data["output_slot_info"] = \
self._extract_output_slot_info(
model_data["output_slot_info"]
)
try:
ds_model = ds_factory.create_model(model_data)
except Exception as e:
msg = (
"Unable to create model for DataSource {} : {}. "
"This is likely due to a coding "
"error in the plugin. Check the logs for more "
"information.".format(ds_id, e)
)
logger.exception(msg)
raise ModelInstantiationFailedException(msg)
layer.data_sources.append(ds_model)
layers.append(layer)
return layers
def _extract_mco_parameters(self, mco_id, parameters_data):
"""Extracts the MCO parameters from the data as dictionary.
Parameters
----------
parameters_data: dict
The content of the parameter data key in the MCO model data.
Returns
-------
List of instances of a subclass of BaseMCOParameter
"""
registry = self.factory_registry
parameters = []
for p in parameters_data:
parameter_id = p["id"]
try:
factory = registry.mco_parameter_factory_by_id(
mco_id, parameter_id)
except KeyError:
raise MissingPluginException(
"Could not read file. "
"The plugin responsible for the missing MCO '{}' "
"parameter key '{}' may be missing or broken.".format(
mco_id, parameter_id)
)
try:
model = factory.create_model(p["model_data"])
except Exception as e:
msg = (
"Unable to create model for MCO {} parameter {} : {}. "
"This is likely due to an error in the plugin. "
"Check the logs for more information.".format(
mco_id, parameter_id, e))
logger.exception(msg)
raise ModelInstantiationFailedException(msg)
parameters.append(model)
def _extract_input_slot_info(self, info):
return [InputSlotInfo(**d) for d in info]
def _extract_output_slot_info(self, info):
return [OutputSlotInfo(**d) for d in info]
def _extract_notification_listeners(self, wf_data):
registry = self.factory_registry
listeners = []
for nl_entry in wf_data["notification_listeners"]:
nl_id = nl_entry["id"]
try:
nl_factory = registry.notification_listener_factory_by_id(
nl_id)
except KeyError:
raise MissingPluginException(
"Could not read file. "
"The plugin responsible for the missing "
"notification listener key '{}' may be missing "
"or broken.".format(nl_id)
)
model_data = nl_entry["model_data"]
try:
model = nl_factory.create_model(model_data)
except Exception as e:
msg = (
"Unable to create model for Notification Listener "
"{} : {}. This is likely due to an error in the plugin. "
"Check the logs for more information.".format(nl_id, e))
logger.exception(msg)
raise ModelInstantiationFailedException(msg)
listeners.append(model)
return listeners