[cmake] Fix dependency tracking for multiple operators

CMakes add_custom_command occasionally (undeterministically)
trips over when multiple files are defined as output. The
result is unnecessary regeneration upon every change of the
accompanying C++ source...

The commit fixes the issue by defining one custom command per
operator. This has the additional pro of generating more verbose
messages during generation. Implementation wise, CMake needed
to extract more information from the ini file, so I switched
to using dune-testtools Python-CMake interface.