Tune sbatch file

applications/poisson_dg/CMakeLists.txt

@@ -3,3 +3,5 @@ dune_add_formcompiler_system_test(UFLFILE poisson_dg.ufl
                                   INIFILE poisson_dg.mini
                                   NO_TESTS
                                   )
+
+dune_symlink_to_source_files(FILES donkey.sbatch)

applications/poisson_dg/donkey.sbatch

@@ -2,37 +2,38 @@
 
 # Load modules
 ml gcc/6.2
+ml intelmpi
 ml openblas
 ml metis
 ml suitesparse
 
 # Set a name for the job
-#sbatch -J poisson_dg
+#SBATCH -J poisson_dg
 
 # Number of processes
-#sbatch -n 16
+#SBATCH -n 16
 
 # Choose the SLURM partition (sinfo for overview)
-#sbatch -p haswell16c
+#SBATCH -p haswell16c
 
 # Each process needs two PUs: circumvent hyperthreading
-#sbatch -c 2
+#SBATCH -c 2
 
 # Pin processes to cores
 # (Possible values: socket, core)
-#sbatch --cpu_bind=core,verbose
+SRUNOPT="--cpu_bind=verbose,core"
 
 # Run the opcount executables
-srun ./app_poisson_dg_deg2_opcount app_poisson_dg_deg2_opcount.ini
-srun ./app_poisson_dg_deg3_opcount app_poisson_dg_deg3_opcount.ini
-srun ./app_poisson_dg_deg4_opcount app_poisson_dg_deg4_opcount.ini
-srun ./app_poisson_dg_deg5_opcount app_poisson_dg_deg5_opcount.ini
+srun $SRUNOPT ./app_poisson_dg_deg2_opcount app_poisson_dg_deg2_opcount.ini
+srun $SRUNOPT ./app_poisson_dg_deg3_opcount app_poisson_dg_deg3_opcount.ini
+srun $SRUNOPT ./app_poisson_dg_deg4_opcount app_poisson_dg_deg4_opcount.ini
+srun $SRUNOPT ./app_poisson_dg_deg5_opcount app_poisson_dg_deg5_opcount.ini
 
 # Run the timing executables
 COUNT=0
 while [ $COUNT -lt 5 ]; do
-    srun ./app_poisson_dg_deg2_nonopcount app_poisson_dg_deg2_nonopcount.ini
-    srun ./app_poisson_dg_deg3_nonopcount app_poisson_dg_deg3_nonopcount.ini
-    srun ./app_poisson_dg_deg4_nonopcount app_poisson_dg_deg4_nonopcount.ini
-    srun ./app_poisson_dg_deg5_nonopcount app_poisson_dg_deg5_nonopcount.ini
+    srun $SRUNOPT ./app_poisson_dg_deg2_nonopcount app_poisson_dg_deg2_nonopcount.ini
+    srun $SRUNOPT ./app_poisson_dg_deg3_nonopcount app_poisson_dg_deg3_nonopcount.ini
+    srun $SRUNOPT ./app_poisson_dg_deg4_nonopcount app_poisson_dg_deg4_nonopcount.ini
+    srun $SRUNOPT ./app_poisson_dg_deg5_nonopcount app_poisson_dg_deg5_nonopcount.ini
 done